Located in File: /phpDocumentor/Io.inc
 $ignore (line 63)
 regexp-ready string to search for basename of ignore strings),...)
 $phpDocOptions (line 57)
 and to the different web interfaces
 $valid_booleans = arrayUse lowercase letters always, to simplify string comparisons
 Constructor Io (line 87)
 Array is in the format of:
[filename][tag][] = "f"; [filename][tag][] = "-file"; [filename][desc] "name of file to parse"
 Method checkIgnore (line 717)
 
 Method dirList (line 377)
 
 Method displayHelpMsg (line 204)
 
 Method getAllFiles (line 888)
 wildcards
 Method getBase (line 444)
 takes the list of files, and returns the subdirectory they share in common, so in this list:
getBase will return "/dir1/dir2"
 Method getDirTree (line 564)
 
 Method getReadmeInstallChangelog (line 537)
 
 Method getRegExpableSearchString (line 832)
 
 Method getTutorials (line 493)
 files to parse
 Method isIncludeable (line 245)
 then calls http://www.php.net/is_readable when it finds the file
 Method parseArgv (line 277)
 
 Method readPhpFile (line 648)
 file extensions are set in phpdoc.inc
 Method removeNonMatches (line 859)
 $match
 Method _setupIgnore (line 796)